Chrono Cross- Brilliant yet so underrated.
Final Fantasy IX- You've all heard of VII, VIII, X, X-2, XI... where's the 9 love?
Legend of Zelda: Ocarina of Time (director's cut)-still the greatest thing since, before, and after slice bread.
Phantasy Star Online- Hunters unite! My mog could beat your mog any day! Now, about that lack of a keyboard...
Castlevania: Aria of Sorrow- not a traditional RPG, but one none-the-less, and the best damn 2-D game since Symphonia of the Night... that's saying a lot, people.

Fatality.

Final Fantasy 7
Legend of Legaia
Star Wars KOTOR

Pretentious Wrote: Illusion of Gaia for the SNES

Thank you for mentioning that one.

Final Fantasy 6
Final Fantasy X
Xenogears
Illusion Of Gaia
Legend of Dragoon (caught so much crap, but had the best graphics for the PS1, IMO)
Breath Of Fire 3
Secret Of Mana (they NEED to port this to GBA)
Sword Of Mana (very pleased with this game)
Golden Sun 1 and 2 (great all around RPG for GBA)

um not really into RPGS but I've played a ton of em I've only beaten:

Chrono trigger
Tales Of Phantasia
Front Mission 1(greatly underrated)
Seiken Densetsu 3

some I liked were:

bahamut Lagoon I didn't get in Jap but it seemed cool
Mario RPG i never beat but it was grand
Front Mission 2 Gun Hazard is amazing I just Never beat the boss
Legend Of Zelda Majora's Mask is the greatest Zelda Game in this book just because it strayed away from the usual...
Panzer Dragoon Saga was fantastic
I Never could get into Final fantasy but I did play Crystal Chronicles over a friends house and all I remember doing was carry a damned bucket and laughing whole heartedly...

legacy of kain: blood omen
chrono triger, i dont have played crono cross but i think it is good
final fantasy mistic quest
shodai nekketsu kouha kunio kun

FFVII

Lets see,

Phantasy Star IV
Secret of Mana
Parasite Eve 1 & 2
Phantasy Star Online
Shenmue
Kingdom Hearts
Final Fantasy VII, VIII, X, X-2
Silent Hill Series
Pokemon

Eye of the Beholder 1
Menzoberranzan
Landstalker
Dark Sun 2
Stone Prophet
Baldurs Gate

ok here we go my fav RPG's are as follows

Final Fantasy 6 (not the edited U.S 3)
Final Fantasy 7
Secret Of Mana
Star Ocean 1
Tales of Phantasia
Seiken Densetsu 3
Mario Rpg
Vagrant story ( I wish they did a sequal to this)
Kingdom Hearts
Summoner 1 + 2
Front Mission 1 + 4